Skip to main content

Table 1 Overview of RNA-Seq data

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

Sample Raw Reads Clean Reads Raw bases Clean Pairs (%) Total_Alignments (bp) Coverage (Total_Alignments/ Genome_length)%) Successfully assigned alignments
XL1 50,011,936 49,981,382 4,501,074,240 24,990,691 (99.94 %) 25,827,924 1.0323273 19,158,796 (74.20 %)
XL2 49,981,708 49,963,086 4,498,353,720 24,981,543 (99.96 %) 25,815,470 1.0318295 18,329,302 (71.00 %)
XL3 50,413,430 50,394,894 4,537,208,700 25,197,447 (99.96 %) 26,161,129 1.0456453 18,061,930 (69.00 %)
XL4 50,375,286 50,340,582 4,533,775,740 25,170,291 (99.93 %) 25,968,916 1.0379626 18,816,287 (72.50 %)
XL5 50,368,172 50,349,522 4,533,135,480 25,174,761 (99.96 %) 26,071,102 1.0420470 18,272,816 (70.10 %)
XL6 52,218,318 50,837,574 7,832,747,700 25,418,787 (97.36 %) 26,311,441 1.0516532 19,834,463 (75.40 %)
XL7 50,004,320 48,770,860 7,500,648,000 24,385,430 (97.53 %) 25,226,371 1.0082835 18,583,326 (73.70 %)
XS1 66,455,060 64,122,488 6,645,506,000 32,061,244 (96.49 %) 32,672,160 1.3058875 22,968,529 (70.30 %)
XS2 66,046,332 63,662,060 6,604,633,200 31,831,030 (96.39 %) 31,595,025 1.2628350 22,116,518 (70.00 %)
XS3 63,770,656 63,770,656 6,377,065,600 30,775,719 (96.52 %) 29,952,835 1.1971976 20,607,551 (68.80 %)
XS4 68,528,104 66,122,768 6,852,810,400 33,061,384 (96.49 %) 33,824,450 1.3519438 25,635,551 (75.79 %)
XS5 66,959,152 64,856,636 6,695,915,200 32,428,318 (96.86 %) 32,875,650 1.3140208 23,289,111 (70.84 %)
XS6 67,665,568 65,344,640 6,766,556,800 32,672,320 (96.57 %) 31,838,098 1.2725505 22,703,748 (71.31 %)
XS7 67,002,792 64,436,586 6,700,279,200 32,218,293 (96.17 %) 31,845,484 1.2728457 22,524,311 (70.73 %)