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Table 1 Overview of RNA-Seq data

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

Sample

Raw Reads

Clean Reads

Raw bases

Clean Pairs (%)

Total_Alignments (bp)

Coverage (Total_Alignments/ Genome_length)%)

Successfully assigned alignments

XL1

50,011,936

49,981,382

4,501,074,240

24,990,691 (99.94 %)

25,827,924

1.0323273

19,158,796 (74.20 %)

XL2

49,981,708

49,963,086

4,498,353,720

24,981,543 (99.96 %)

25,815,470

1.0318295

18,329,302 (71.00 %)

XL3

50,413,430

50,394,894

4,537,208,700

25,197,447 (99.96 %)

26,161,129

1.0456453

18,061,930 (69.00 %)

XL4

50,375,286

50,340,582

4,533,775,740

25,170,291 (99.93 %)

25,968,916

1.0379626

18,816,287 (72.50 %)

XL5

50,368,172

50,349,522

4,533,135,480

25,174,761 (99.96 %)

26,071,102

1.0420470

18,272,816 (70.10 %)

XL6

52,218,318

50,837,574

7,832,747,700

25,418,787 (97.36 %)

26,311,441

1.0516532

19,834,463 (75.40 %)

XL7

50,004,320

48,770,860

7,500,648,000

24,385,430 (97.53 %)

25,226,371

1.0082835

18,583,326 (73.70 %)

XS1

66,455,060

64,122,488

6,645,506,000

32,061,244 (96.49 %)

32,672,160

1.3058875

22,968,529 (70.30 %)

XS2

66,046,332

63,662,060

6,604,633,200

31,831,030 (96.39 %)

31,595,025

1.2628350

22,116,518 (70.00 %)

XS3

63,770,656

63,770,656

6,377,065,600

30,775,719 (96.52 %)

29,952,835

1.1971976

20,607,551 (68.80 %)

XS4

68,528,104

66,122,768

6,852,810,400

33,061,384 (96.49 %)

33,824,450

1.3519438

25,635,551 (75.79 %)

XS5

66,959,152

64,856,636

6,695,915,200

32,428,318 (96.86 %)

32,875,650

1.3140208

23,289,111 (70.84 %)

XS6

67,665,568

65,344,640

6,766,556,800

32,672,320 (96.57 %)

31,838,098

1.2725505

22,703,748 (71.31 %)

XS7

67,002,792

64,436,586

6,700,279,200

32,218,293 (96.17 %)

31,845,484

1.2728457

22,524,311 (70.73 %)