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Table 2 The top 10 genes at highly expressed level in XS and XL groups

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

Gene_ID

Gene symbol

logFC

Pvalue

Padj

Readcount-XL

Readcount-XS

Description

ENSSSCG00000018075

COX1

2.307

8.16623E-13

1.26806E-11

15422.571

3116.238

cytochrome c oxidase subunit I

ENSSSCG00000018082

COX3

2.607

1.74415E-17

4.91169E-16

6961.009

1142.695

cytochrome c oxidase subunit III

ENSSSCG00000036135

COL1A1

0.148

0.521083524

0.609618558

6521.541

5887.012

collagen type I alpha 1 chain

ENSSSCG00000004489

EEF1A1

0.531

0.000000096

0.000000671

6455.302

4468.317

eukaryotic translation elongation factor 1 alpha 1

ENSSSCG00000016034

COL3A1

0.295

0.169601735

0.244697188

6382.088

5203.422

collagen type III alpha 1 chain

ENSSSCG00000018081

ATP6

4.384

8.7737E-25

5.28171E-23

6356.744

304.543

ATP synthase F0 subunit 6

ENSSSCG00000015326

COL1A2

0.262

0.300558594

0.392270172

5492.596

6588.433

collagen type I alpha 2 chain

ENSSSCG00000021208

SELENOP

1.372

9.40805E-06

4.42317E-05

4865.024

1879.905

selenoprotein P

ENSSSCG00000034942

StAR

6.42

3.4925E-30

3.60421E-28

4106.007

47.92

steroidogenic acute regulatory protein

ENSSSCG00000011033

VIM

0.362

0.012616959

0.027517822

3545.875

2758.309

vimentin

ENSSSCG00000025675

EEF2

0.003

0.970797113

0.977978175

2702.43

2697.277

eukaryotic translation elongation factor 2

ENSSSCG00000003514

HSPG2

-1.508

2.12554E-08

1.65259E-07

1779.964

5061.75

heparan sulfate proteoglycan 2

ENSSSCG00000000423

 

-0.996

0.000106900

0.000398237

1358.776

2709.169

Unknown protein

ENSSSCG00000003654

MACF1

-2.238

8.38151E-28

6.894E-26

550.064

2594.786

microtubule actin crosslinking factor 1