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Table 4 Compare of DEGs between Xiang and Yorkshire pigs (reported by Zhang et al. [17])

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

No.

Gene_ID

Gene name

Xiang pig

Yorkshire sow

Gene description

Up/Down (XL/XS)

Log2FC

Up/Down (YH/YL)

Log2FC

1

ENSSSCG00000018082

COX3

UP

2.61

Up

2.17

cytochrome c oxidase subunit III

2

ENSSSCG00000034942

STAR

UP

6.42

Up

3.56

steroidogenic acute regulatory protein

3

ENSSSCG00000018094

CYTB

UP

3.09

Up

2.01

cytochrome b

4

ENSSSCG00000025273

CYP11A1

UP

4.92

Up

3.99

cytochrome P450 family 11 subfamily A member 1

5

ENSSSCG00000010400

MSMB

UP

6.37

Up

4.58

microseminoprotein beta

6

ENSSSCG00000009759

SCARB1

UP

4.22

Up

3.59

scavenger receptor class B member 1

7

ENSSSCG00000028512

LDLR

UP

3.78

Up

2.73

low density lipoprotein receptor

8

ENSSSCG00000017164

TIMP-2

UP

1.90

Up

1.65

TIMP metallopeptidase inhibitor 2

9

ENSSSCG00000039548

PTGFR

UP

4.56

Up

3.62

prostaglandin F receptor

10

ENSSSCG00000012583

ACSL4

UP

2.87

Up

2.33

acyl-CoA synthetase long chain family member 4

11

ENSSSCG00000007435

PLTP

UP

3.08

Up

3.21

phospholipid transfer protein

12

ENSSSCG00000013401

DKK3

UP

2.46

Up

2.20

dickkopf WNT signaling pathway inhibitor 3

13

ENSSSCG00000012625

PGRMC1

UP

2.02

Up

2.66

progesterone receptor membrane component 1

14

ENSSSCG00000016267

ITM2C

UP

2.20

Up

1.98

integral membrane protein 2 C

15

ENSSSCG00000011747

CLDN11

UP

4.14

Up

2.77

claudin 11

16

ENSSSCG00000017024

CCNG1

UP

1.59

Up

1.58

cyclin G1

17

ENSSSCG00000018084

ND3

UP

3.87

Up

1.87

NADH dehydrogenase subunit 3

18

ENSSSCG00000010554

SCD

UP

1.95

Up

3.97

stearoyl-CoA desaturase

19

ENSSSCG00000014338

HSPA9

UP

1.02

Up

1.69

heat shock protein family A (Hsp70) member 9

20

ENSSSCG00000036956

SOCS3

UP

4.31

Up

2.90

suppressor of cytokine signaling 3

21

ENSSSCG00000032007

RTN4

UP

1.56

Up

2.36

reticulon 4

22

ENSSSCG00000034207

CEBPB

UP

3.92

Up

2.53

CCAAT enhancer binding protein beta

23

ENSSSCG00000025486

MDH2

UP

1.27

Up

2.16

malate dehydrogenase 2

24

ENSSSCG00000015709

SLC35F5

UP

2.42

Up

2.45

solute carrier family 35 member F5

25

ENSSSCG00000008701

LRPAP1

UP

1.30

Up

1.45

LDL receptor related protein associated protein 1

26

ENSSSCG00000003139

BCAT2

UP

1.65

Up

2.78

branched chain amino acid transaminase 2

27

ENSSSCG00000001770

CTSH

UP

1.47

Up

1.77

cathepsin H

28

ENSSSCG00000022742

PRDX6

UP

1.53

Up

2.52

peroxiredoxin 6

29

ENSSSCG00000027114

SCP2

UP

1.93

Up

5.14

sterol carrier protein 2

30

ENSSSCG00000015268

FMO1

UP

4.32

Up

3.71

flavin containing dimethylaniline monoxygenase 1

31

ENSSSCG00000007739

GUSB

UP

1.29

Up

2.39

glucuronidase beta

32

ENSSSCG00000013599

ANGPTL4

UP

2.89

Up

2.76

angiopoietin like 4

33

ENSSSCG00000009150

HADH

UP

1.24

Up

1.39

hydroxyacyl-CoA dehydrogenase

34

ENSSSCG00000000767

ATP6V1E1

UP

1.04

Up

1.63

ATPase H + transporting V1 subunit E1

35

ENSSSCG00000008237

RETSAT

UP

1.06

Up

1.39

retinol saturase

36

ENSSSCG00000005970

SQLE

UP

2.40

Up

3.42

squalene epoxidase

37

ENSSSCG00000009062

MGARP

UP

4.56

Up

3.66

mitochondria localized glutamic acid rich protein

38

ENSSSCG00000008963

AREG

UP

9.30

Up

5.20

amphiregulin

39

ENSSSCG00000006522

GBA

UP

1.28

Up

1.78

glucosylceramidase beta

40

ENSSSCG00000027130

TNFRSF12A

UP

3.34

Up

1.84

TNF receptor superfamily member 12 A

41

ENSSSCG00000030318

SDHC

UP

1.43

Up

1.83

succinate dehydrogenase complex subunit C

42

ENSSSCG00000000757

ADIPOR2

UP

1.13

Up

1.86

adiponectin receptor 2

43

ENSSSCG00000011723

MME

UP

2.23

Up

2.28

membrane metalloendopeptidase

44

ENSSSCG00000009219

IBSP

UP

9.29

Up

3.41

integrin binding sialoprotein

45

ENSSSCG00000010853

EPHX1

UP

2.21

Up

3.74

epoxide hydrolase 1

46

ENSSSCG00000010537

GOT1

UP

1.48

Up

3.39

glutamic-oxaloacetic transaminase 1

47

ENSSSCG00000032213

DBI

UP

1.30

Up

1.55

diazepam binding inhibitor, acyl-CoA binding protein

48

ENSSSCG00000022998

PKIG

UP

1.74

Up

1.62

cAMP-dependent protein kinase inhibitor gamma

49

ENSSSCG00000006296

ATP1B1

UP

2.15

Up

2.59

ATPase Na+/K + transporting subunit beta 1

50

ENSSSCG00000001435

AGPAT1

UP

1.91

Up

1.42

1-acylglycerol-3-phosphate O-acyltransferase 1

51

ENSSSCG00000006369

F11R

UP

2.76

Up

2.34

F11 receptor

52

ENSSSCG00000016990

ATP6V0E1

UP

1.76

Up

1.81

ATPase H + transporting V0 subunit e1

53

ENSSSCG00000037912

FITM2

UP

1.95

Up

2.20

fat storage inducing transmembrane protein 2

54

ENSSSCG00000006337

HSD17B7

UP

1.69

Up

3.74

hydroxysteroid 17-beta dehydrogenase 7

55

ENSSSCG00000028943

ECH1

UP

1.57

Up

2.16

enoyl-CoA hydratase 1

56

ENSSSCG00000021774

B3GALNT1

UP

1.94

Up

2.28

beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)

57

ENSSSCG00000034896

HPRT1

UP

1.43

Up

1.50

hypoxanthine phosphoribosyltransferase 1

58

ENSSSCG00000015299

STEAP4

UP

2.61

Up

5.01

STEAP4 metalloreductase

59

ENSSSCG00000009245

SCD5

UP

1.13

Up

1.89

stearoyl-CoA desaturase 5

60

ENSSSCG00000036893

PTHLH

UP

3.24

Up

3.37

parathyroid hormone like hormone

61

ENSSSCG00000006512

FDPS

UP

2.46

Up

3.53

farnesyl diphosphate synthase

62

ENSSSCG00000038221

HSD17B2

UP

5.76

Up

6.95

hydroxysteroid 17-beta dehydrogenase 2

63

ENSSSCG00000007507

PCK1

UP

5.70

Up

6.96

phosphoenolpyruvate carboxykinase 1

64

ENSSSCG00000000182

WNT10B

UP

3.38

Up

2.90

Wnt family member 10B

65

ENSSSCG00000016958

PIK3R1

Down

-1.05

Down

-1.50

phosphoinositide-3-kinase regulatory subunit 1

66

ENSSSCG00000025349

CCDC14

Down

-2.19

Down

-1.49

coiled-coil domain containing 14

67

ENSSSCG00000013772

ASF1B

Down

-1.54

Down

-1.95

anti-silencing function 1B histone chaperone

68

ENSSSCG00000031027

IRS4

Down

-2.02

Down

-3.11

insulin receptor substrate 4

69

ENSSSCG00000005136

IFNE

Down

-3.02

Down

-2.10

interferon epsilon

70

ENSSSCG00000009490

DCT

Down

-1.58

Down

-1.86

dopachrome tautomerase

71

ENSSSCG00000006125

CALB1

Down

-2.37

Up

4.00

calbindin 1

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Porcine Health Management

ISSN: 2055-5660

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