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Table 4 Compare of DEGs between Xiang and Yorkshire pigs (reported by Zhang et al. [17])

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

No. Gene_ID Gene name Xiang pig Yorkshire sow Gene description
Up/Down (XL/XS) Log2FC Up/Down (YH/YL) Log2FC
1 ENSSSCG00000018082 COX3 UP 2.61 Up 2.17 cytochrome c oxidase subunit III
2 ENSSSCG00000034942 STAR UP 6.42 Up 3.56 steroidogenic acute regulatory protein
3 ENSSSCG00000018094 CYTB UP 3.09 Up 2.01 cytochrome b
4 ENSSSCG00000025273 CYP11A1 UP 4.92 Up 3.99 cytochrome P450 family 11 subfamily A member 1
5 ENSSSCG00000010400 MSMB UP 6.37 Up 4.58 microseminoprotein beta
6 ENSSSCG00000009759 SCARB1 UP 4.22 Up 3.59 scavenger receptor class B member 1
7 ENSSSCG00000028512 LDLR UP 3.78 Up 2.73 low density lipoprotein receptor
8 ENSSSCG00000017164 TIMP-2 UP 1.90 Up 1.65 TIMP metallopeptidase inhibitor 2
9 ENSSSCG00000039548 PTGFR UP 4.56 Up 3.62 prostaglandin F receptor
10 ENSSSCG00000012583 ACSL4 UP 2.87 Up 2.33 acyl-CoA synthetase long chain family member 4
11 ENSSSCG00000007435 PLTP UP 3.08 Up 3.21 phospholipid transfer protein
12 ENSSSCG00000013401 DKK3 UP 2.46 Up 2.20 dickkopf WNT signaling pathway inhibitor 3
13 ENSSSCG00000012625 PGRMC1 UP 2.02 Up 2.66 progesterone receptor membrane component 1
14 ENSSSCG00000016267 ITM2C UP 2.20 Up 1.98 integral membrane protein 2 C
15 ENSSSCG00000011747 CLDN11 UP 4.14 Up 2.77 claudin 11
16 ENSSSCG00000017024 CCNG1 UP 1.59 Up 1.58 cyclin G1
17 ENSSSCG00000018084 ND3 UP 3.87 Up 1.87 NADH dehydrogenase subunit 3
18 ENSSSCG00000010554 SCD UP 1.95 Up 3.97 stearoyl-CoA desaturase
19 ENSSSCG00000014338 HSPA9 UP 1.02 Up 1.69 heat shock protein family A (Hsp70) member 9
20 ENSSSCG00000036956 SOCS3 UP 4.31 Up 2.90 suppressor of cytokine signaling 3
21 ENSSSCG00000032007 RTN4 UP 1.56 Up 2.36 reticulon 4
22 ENSSSCG00000034207 CEBPB UP 3.92 Up 2.53 CCAAT enhancer binding protein beta
23 ENSSSCG00000025486 MDH2 UP 1.27 Up 2.16 malate dehydrogenase 2
24 ENSSSCG00000015709 SLC35F5 UP 2.42 Up 2.45 solute carrier family 35 member F5
25 ENSSSCG00000008701 LRPAP1 UP 1.30 Up 1.45 LDL receptor related protein associated protein 1
26 ENSSSCG00000003139 BCAT2 UP 1.65 Up 2.78 branched chain amino acid transaminase 2
27 ENSSSCG00000001770 CTSH UP 1.47 Up 1.77 cathepsin H
28 ENSSSCG00000022742 PRDX6 UP 1.53 Up 2.52 peroxiredoxin 6
29 ENSSSCG00000027114 SCP2 UP 1.93 Up 5.14 sterol carrier protein 2
30 ENSSSCG00000015268 FMO1 UP 4.32 Up 3.71 flavin containing dimethylaniline monoxygenase 1
31 ENSSSCG00000007739 GUSB UP 1.29 Up 2.39 glucuronidase beta
32 ENSSSCG00000013599 ANGPTL4 UP 2.89 Up 2.76 angiopoietin like 4
33 ENSSSCG00000009150 HADH UP 1.24 Up 1.39 hydroxyacyl-CoA dehydrogenase
34 ENSSSCG00000000767 ATP6V1E1 UP 1.04 Up 1.63 ATPase H + transporting V1 subunit E1
35 ENSSSCG00000008237 RETSAT UP 1.06 Up 1.39 retinol saturase
36 ENSSSCG00000005970 SQLE UP 2.40 Up 3.42 squalene epoxidase
37 ENSSSCG00000009062 MGARP UP 4.56 Up 3.66 mitochondria localized glutamic acid rich protein
38 ENSSSCG00000008963 AREG UP 9.30 Up 5.20 amphiregulin
39 ENSSSCG00000006522 GBA UP 1.28 Up 1.78 glucosylceramidase beta
40 ENSSSCG00000027130 TNFRSF12A UP 3.34 Up 1.84 TNF receptor superfamily member 12 A
41 ENSSSCG00000030318 SDHC UP 1.43 Up 1.83 succinate dehydrogenase complex subunit C
42 ENSSSCG00000000757 ADIPOR2 UP 1.13 Up 1.86 adiponectin receptor 2
43 ENSSSCG00000011723 MME UP 2.23 Up 2.28 membrane metalloendopeptidase
44 ENSSSCG00000009219 IBSP UP 9.29 Up 3.41 integrin binding sialoprotein
45 ENSSSCG00000010853 EPHX1 UP 2.21 Up 3.74 epoxide hydrolase 1
46 ENSSSCG00000010537 GOT1 UP 1.48 Up 3.39 glutamic-oxaloacetic transaminase 1
47 ENSSSCG00000032213 DBI UP 1.30 Up 1.55 diazepam binding inhibitor, acyl-CoA binding protein
48 ENSSSCG00000022998 PKIG UP 1.74 Up 1.62 cAMP-dependent protein kinase inhibitor gamma
49 ENSSSCG00000006296 ATP1B1 UP 2.15 Up 2.59 ATPase Na+/K + transporting subunit beta 1
50 ENSSSCG00000001435 AGPAT1 UP 1.91 Up 1.42 1-acylglycerol-3-phosphate O-acyltransferase 1
51 ENSSSCG00000006369 F11R UP 2.76 Up 2.34 F11 receptor
52 ENSSSCG00000016990 ATP6V0E1 UP 1.76 Up 1.81 ATPase H + transporting V0 subunit e1
53 ENSSSCG00000037912 FITM2 UP 1.95 Up 2.20 fat storage inducing transmembrane protein 2
54 ENSSSCG00000006337 HSD17B7 UP 1.69 Up 3.74 hydroxysteroid 17-beta dehydrogenase 7
55 ENSSSCG00000028943 ECH1 UP 1.57 Up 2.16 enoyl-CoA hydratase 1
56 ENSSSCG00000021774 B3GALNT1 UP 1.94 Up 2.28 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
57 ENSSSCG00000034896 HPRT1 UP 1.43 Up 1.50 hypoxanthine phosphoribosyltransferase 1
58 ENSSSCG00000015299 STEAP4 UP 2.61 Up 5.01 STEAP4 metalloreductase
59 ENSSSCG00000009245 SCD5 UP 1.13 Up 1.89 stearoyl-CoA desaturase 5
60 ENSSSCG00000036893 PTHLH UP 3.24 Up 3.37 parathyroid hormone like hormone
61 ENSSSCG00000006512 FDPS UP 2.46 Up 3.53 farnesyl diphosphate synthase
62 ENSSSCG00000038221 HSD17B2 UP 5.76 Up 6.95 hydroxysteroid 17-beta dehydrogenase 2
63 ENSSSCG00000007507 PCK1 UP 5.70 Up 6.96 phosphoenolpyruvate carboxykinase 1
64 ENSSSCG00000000182 WNT10B UP 3.38 Up 2.90 Wnt family member 10B
65 ENSSSCG00000016958 PIK3R1 Down -1.05 Down -1.50 phosphoinositide-3-kinase regulatory subunit 1
66 ENSSSCG00000025349 CCDC14 Down -2.19 Down -1.49 coiled-coil domain containing 14
67 ENSSSCG00000013772 ASF1B Down -1.54 Down -1.95 anti-silencing function 1B histone chaperone
68 ENSSSCG00000031027 IRS4 Down -2.02 Down -3.11 insulin receptor substrate 4
69 ENSSSCG00000005136 IFNE Down -3.02 Down -2.10 interferon epsilon
70 ENSSSCG00000009490 DCT Down -1.58 Down -1.86 dopachrome tautomerase
71 ENSSSCG00000006125 CALB1 Down -2.37 Up 4.00 calbindin 1