Table 7 Identity between the H1av herd strains and the corresponding vaccine strain of Respiporc FLU3 (Ceva Santé Animale, France)
Herds | Accession number | Lineage | Identity to corresponding vaccine strain included in Respiporc FLU3 | No. of mutations in AS/RBC |
|---|---|---|---|---|
1 | H1N1pdm09 | – | ||
2 | OM350200 OM350201 | H1avN2sw | HA protein identity to HA Haselünne/IDT2617/2003: 92% NA protein identity to NA Bakum/IDT1769/2003(H3N2): 89% | AS: 5 = Cb: 2, Sa: 1, Ca: 1, Ca2: 1 and Sb: 1 and RBS: 17 |
4 | OM350202 OM350203 | H1avN2sw | HA protein identity to HA Haselünne/IDT2617/2003: 92% NA protein identity to NA Bakum/IDT1769/2003(H3N2): 89% | AS: 7 = Cb: 1, Sa: 2, Ca2: and Sb: 3 and RBS: 17 |
5 | OM350204 OM350205 | H1avN2hu | HA protein identity to HA Haselünne/IDT2617/2003: 92% NA protein identity to NA Bakum/IDT1769/2003(H3N2): 85% NA protein identity to NA Bakum/IDT1833/2000(H1N2): 82% | AS: 5 = Sa: 3, Ca1: 1, Sb:1 and RBS: 15 |
9 | OM350207 | H1pdm09N1av | – NA protein identity to NA Haselünne/IDT2617/2003: 90.4% | |
10 | OM350208 OM350209 | H1avN2sw | HA protein identity to HA Haselünne/IDT2617/2003: 89% NA protein identity to NA Bakum/IDT1769/2003(H3N2): 88% | AS: 9 = Sa: 3, Ca1: 4, Ca2: 1 and Sb 1 and RBS: 23 |