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Table 7 The detection of eleven hub genes and the protein-protein network

From: Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

No.

Gene in node1

Combined gene numbers

Genes in the node 2

1

COX1

35

AICDA,ATP6,ATP8,CAT,COX17,COX18,COX2,COX3,COX5A,COX5B,COX6A1,CYCS,CYTB,EXO1,HFM1,HSPA9,HSPD1,MRPS7,MT-ND2,ND1,ND3,ND4,ND4L,ND5,ND6,NDUFS2,NRF1,PNOC,POLD1,RAG2,REEP5,SDHC,SOD2,TCTP,UBC

2

COX3

23

AICDA,ATP6,ATP8,COX1,COX2,COX5A,COX5B,COX6A1,CYCS,CYTB,HIGD1A,MT-ND2,ND1,ND3,ND4,ND4L,ND5,ND6,NDUFS2,PNOC,RPS12,SDHC,SOD2

3

CYP11A1

17

AR,CEL,CYB5A,CYP21A2,DHCR24,DHRS11,FSHR,GNRH1,HSD11B2,HSD17B1,HSD17B6,HSD17B7,HSD3B1,LIPA,SCARB1,SOAT1,STAR

4

DHRS4

20

ACOT4,ALDH1A1,ALDH1A2,ARHGAP11A,CAT,CYB5A,CYTH4,DAO1,ECH1,EPHX2,GSTO2,HSD17B2,HSD17B4,IDH1,KIF4A,PECR,RDH12,RDH16,RETSAT,STX12

5

HSD3B1

20

CYB5A,CYP11A1,CYP21A2,CYP51,DHCR7,DHRS11,FDFT1,FSHR,HSD11B2,HSD17B1,HSD17B2,HSD17B4,HSD17B6,HSD17B7,LSS,MSMO1,SC5D,SQLE,STAR,TM7SF2

6

MSMO1

25

ACAT1,ACAT2,COL6A5,CPOX,CYB5A,CYP51,DHCR24,DHCR7,FDFT1,FDPS,HMGCR,HMGCS1,HSD17B12,HSD17B7,HSD3B1,INSIG1,LSS,MVK,NSDHL,SC5D,SCD,SCD5,SQLE,STARD4,TM7SF2

7

NR4A1

13

AR,ATF3,DUSP1,EGR1,EGR2,FOS,GRASP,MAPK3,NOR-1,PCK1,RPS6KA3,RTN4,VEGFA

8

PTX3

20

ARMC8,ASAH1,C1QA,C1QC,CEP290,CFP,CST3,CSTB,CTSH,CTSZ,F3,GGH,IDH1,NEU1,QPCT,SELP,TIMP2,TNFAIP6,VEGFA,YPEL5

9

RLN

12

ADCY4,ADCY9,ADM,ADORA2B,ADRB1,FSHR,HTR4,KIAA1109,PTHLH,RAMP2,RLF,RXFP4

10

SCARB1

16

ABCA1,ABCG5,APOA1,CD63,CD81,CD82,CYP11A1,EPHA2,HMGCR,LDLR,OLR1,PLTP,PPARA,PPARG,STAR,TSPAN3

11

STAR

17

ADCY9,AR,CYP11A1,CYP21A2,DHRS11,FSHR,GBA,GBI1,GNRH1,HSD17B1,HSD17B6,HSD3B1,SCARB1,STARD4,TSPO2,UGT8,VDAC1